ywqA [2019-08-15 11:07:13]

similar to SNF2 helicase

locus: BSU_36280

pI: 5.01

mw: 105.83 kDa

protein length: 922 aa

gene length: 2769 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.8|Genetics/ other/ based on similarity]

Gene

Coordinates: 3,735,449 3,738,217

The protein

Protein family

• [SW|helicase family] (according to UniProt)
• SNF2/RAD54 helicase family (with [protein|565D91F3E0357C5B16CC342FCDA7EFD4B910829C|YqhH], according to UniProt)

Structure

• [PDB|1Z6A] (from Sulfolobus solfataricus, the C-terminal domain (aa 445 ... 919), 47% identity) [pubmed|15882619]

Expression and Regulation

Operons

• genes: [gene|6AFE06E2F5A5382FBC656E6D532E1D8BFECC4DC2|ywqB]-[gene|265490FA83D6D3F178C26C9240E3CB224513BF42|ywqA]
  description: [Pubmed|22383849]

  additional information

  • An [ncRNA|search|antisense RNA] is predicted for [gene|265490FA83D6D3F178C26C9240E3CB224513BF42|ywqA] [PubMed|20525796]

Biological materials

Mutant

• MGNA-A532 (ywqA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/532 NBRP B. subtilis, Japan]
• BKE36280 ([gene|265490FA83D6D3F178C26C9240E3CB224513BF42|ywqA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE36280 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTGTTCGACGTGGATGAGAA, downstream forward: _UP4_TAATCATGACTAAAAAAGCT
• BKK36280 ([gene|265490FA83D6D3F178C26C9240E3CB224513BF42|ywqA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK36280 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTGTTCGACGTGGATGAGAA, downstream forward: _UP4_TAATCATGACTAAAAAAGCT

References

• 9353933,20525796,24147116,15882619